Lecture 6

6.0 Lesson learning objectives

By the end of this lesson, we should understand what is kmeans clustering and how to apply it to our spatial transcriptomic datasets.

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Hands-on Component

Our in-class hands-on component will analyze our spatial transcriptomics datasets to create a data visualization using kmeans clustering.

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Class Notes

Prof. Fan’s notes from class: genomic-data-visualization-Lesson_6.pptx (click to download)

Prof. Fan’s code from class: code-lesson-6.R (click to download)

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Homework Assignment

None. Complete HW3 if you have not done so already.