Category HW1

HW1: Gene expression pattern for GNB1 and HES4

1. What data types are you visualizing? I am visualizing HES4 and GNB1’s spatial gene expression patterns for eevee.

Spatial Distribution of Cells by Nucleus-to-Cell Ratio Write Up

1. What data types are you visualizing? I am visualizing quantitative data representing the nucleus-to-cell area ratio for each cell, quantitative data of ERBB2 expression levels to indicate gene activity,...

Homework 1 Submission

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Mean Gene Expression of Top Genes in COL Gene Group

1. What data types are you visualizing? I wanted to visualize the expression of genes related to collagen in the sequencing dataset. More specifically, I looked at the mean expression...

The Top 10 Genes Expressed in the Eevee Dataset

1. What data types are you visualizing? I am visualizing gene expression data obtained through sequencing of the top 10 genes expressed in the Eevee dataset.

Scatter Plot of POSTN vs LUM Expression

1. What data types are you visualizing? I am visualizing quantitative data for the expression levels of the POSTN and LUM genes in all the individual cells and I am...

Relationship between expression of LUM and POSTN

1. What data types are you visualizing? I am visualizing quantitative data of the expression count of the POSTN and LUM gene for each cell, and the quantitative data of...

Correlation Between COL1A1 and COL1A2 Gene Expression Levels in the Eevee Dataset

1. What data types are you visualizing? I am visualizing quantitative data of the expression levels of the COL1A1 and COL1A2 genes for each cell in the dataset.

Spatial Distribution of Total Genes Expressed

1. What data types are you visualizing?

Spatial Visualization of POSTN Expression in Tissue

What data types are you visualizing? The data visualized represents the spatial distribution of MS4A1 expression. This is a gene encoding CD20, a well-known surface marker expressed on B-cells, which...

Comparison of Spatial Gene Expression of ESR1 and PGR

1. What data types are you visualizing? I am visualizing quantitative data representing the expression levels of the ESR1 and PGR genes for each cell. Additionally, I am visualizing spatial...

Expression Level Amongst Top 3 Genes

1. What data types are you visualizing? I am visualizing the top 3 genes (COL1A1, IGHG1, and IGKC) expression levels. These are all categorical data types. As in they represent...

10 Genes with the Highest Counts are Expressed Across Most Spots

1. What data types are you visualizing? For this data visualization of the Eevee spatial transcriptomic data, I visualized both categorical data, the 10 genes of interest, and two types...

Hw1 Data Visualization

1. What data types are you visualizing? I am visualizing quantitative data of the total expression level of every gene in the panel chosen for imaging data for each cell....

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1. What data types are you visualizing? My graph visualizes x,y grid data (spatial) overlaid with the cell areas (quantitative). The overlaid density coloring is also quantitative.

Visualizing SDF4 and ERBB2 Expression

This visualization focuses on displaying SDF4 and ERBB2 Expression.

Generation of Heatmap Expressing Top 20 Genes Within Pikachu Dataset

1. What data types are you visualizing? Within the Pikachu dataset that was visualized, gene expression levels across multiple individual cells proved to be a key mechanism in exploring spatial...

HW1: gene expression scatterplot

1. What data types are you visualizing? Spatial data of each cell, i.e the location of the cell within the section of the image, which is represented by x and...

Spatial Distribution and Correlation of ACTA2 and ACTC1 Expression

1. What data types are you visualizing? I am visualizing quantitative data of the expression correlation between ACTA1 and ACTA12 genes with its expression levels and spatial coordinates.

Homework 1 Submission

I am visualizing the gene expression of CD14 and MMP2 and how the expression of these genes relates to cell size.

HW1 for Yi Yang

1. What data types are you visualizing? I’m trying to visualize the spatial (location of ERBB2 expression) and quantitative (ERBB2 expression) data.

Spatial Scatter Plot of Number of Total Transcription

1. What data types are you visualizing? I am visualizing quantitative data of the number of expressed genes for each cell, quantitative data of the area for each cell, and...

Spatial Distribution of SAMD11 Expression Levels

1. What data types are you visualizing? I am visualizing quantitative data representing SAMD11 gene expression levels, and spatial data regarding the x and y aligned positions of data points...

A descriptive title

1. What data types are you visualizing? I am visualizing quantitative data of the expression count of the ERBB2 gene for each cell, quantitative data of the area for each...