Lesson 6: T-distributed Stochastic Neighbor Embedding

Table of Contents

Lecture

Learning objectives

By the end of this lesson, we should understand what is t-distributed stochastic neighbor embedding and how to apply it to our spatial transcriptomic datasets.

Hands-on Component

Our in-class hands-on component will analyzing our spatial transcriptomics datasets to create a data visualization using tSNE.

Class Notes

Prof. Fan’s whiteboard notes from class: genomic-data-visualization-Lesson_6.pptx (click to download)

Prof. Fan’s code from class: code-lesson-6.R (click to download)

Homework Assignment

Complete HW2 if you have not already done so.

Additional resources