Lecture

Learning objectives

By the end of this lesson, we will review our understanding of spatial transcriptomics data based on the datasets we now have access to, how to perform quality control analysis using data visualization, and compute various summary statistics.

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Hands-on Component

Our in-class hands-on component will involve computing summary statistics our spatial transcriptomics dataset to create a data visualization.

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Class Notes

Prof. Fan’s whiteboard notes from class: genomic-data-visualization-Lesson_3.pptx (click to download)

Prof. Fan’s code from class: code-lesson-3.R (click to download)

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Homework Assignment

None. Complete HW1 if you have not done so already.