Lecture 12

12.0 Lesson learning objectives

By the end of this lesson, we should be able to understand spatial proteomics technologies, how they can work, and begin analyzing some spatial proteomics data.

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Hands-on component 12

Our in-class hands-on component will involve analyzing a spatial proteomics dataset.

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Class Lesson Notes 12

Prof. Fan’s slides shown in class: genomic-data-visualization-classnotes-20220221.pptx (click to download)

Prof. Fan’s code from class: inclass-plotting-2022021.R (click to download)

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Homework Assignment 12

Analyze the CODEX dataset to figure out what we’re looking at (mystery!). Perform analyses and create a multi-panel data visualization with a corresponding ‘figure caption’ that describes your data visualization. You are welcome to work as a team.

genomic-data-visualization-HW_5.pptx (click to download)

Make a pull request to submit your homework (due Thursday 6pm).