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  • Overview
  • Installation & Import
  • Input Data
  • Usage
  • Tutorials
    • Aligning two coronal sections of adult mouse brain from MERFISH
    • Aligning partially matched, serial, single-cell resolution breast cancer spatial transcriptomics data from Xenium
    • Aligning single-cell resolution breast cancer spatial transcriptomics data to corresponding H&E staining image from Xenium
    • Aligning partially matched coronal sections of adult mouse brain from Xenium and STARmap PLUS
    • Aligning adult mouse coronal brain sections with the Allen Brain Altas
    • Aligning partial coronal brain sections with the Allen Brain Altas
    • Aligning single-cell resolution spatial transcriptomics data to H&E staining image from Visium
    • Aligning heart ST data from ISS
  • Functions
STalign
  • Tutorials
  • View page source

Tutorials

Contents:

  • Aligning two coronal sections of adult mouse brain from MERFISH
  • Aligning partially matched, serial, single-cell resolution breast cancer spatial transcriptomics data from Xenium
  • Aligning single-cell resolution breast cancer spatial transcriptomics data to corresponding H&E staining image from Xenium
  • Aligning partially matched coronal sections of adult mouse brain from Xenium and STARmap PLUS
  • Aligning adult mouse coronal brain sections with the Allen Brain Altas
  • Aligning partial coronal brain sections with the Allen Brain Altas
  • Aligning single-cell resolution spatial transcriptomics data to H&E staining image from Visium
  • Aligning heart ST data from ISS
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