Package index
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assignFill() - Assigns classification labels to pixels based on gene expression similarity.
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getGenePixelDF() - Extract Gene Expression Values for Shared Pixels Between Two SpatialExperiments
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linearRegression() - Generates linear regression plot for a given gene.
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matchingVariograms() - matchingVariograms
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pixelClass() - Generates a spatial plot of pixel classifications for a given gene.
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plotCorrelationGeneExp() - plotCorrelationGeneExp
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savePlots() - Generates and saves comprehensive visualization plots for specified genes.
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simRanPatternRasts - Simulated Random Spatially Patterned Kidney Datasets
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spatialCorrelation() - spatialCorrelation
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spatialCorrelationGeneExp() - spatialCorrelationGeneExp
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spatialCorrelationGeneExpWithinSample() - spatialCorrelationGeneExpWithinSample
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spatialSimilarity() - Computes spatial similarity of gene expression between two SpatialExperiments.
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speKidney - Simulated Kidney SpatialExperiment Data
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threshold() - Threshold and preprocess gene expression data
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viladomatCorrelation() - viladomatCorrelation