I use R to (try to) figure out which hospital I should go to for shoppable medical services by comparing costs through analyzing Hospital Price Transparency data |

Cross modality image alignment at single cell resolution with STalign |

Spatial Transcriptomics Analysis Of Xenium Lymph Node |

Querying Google Scholar with Rvest |


Alignment of Xenium and Visium spatial transcriptomics data using STalign |

Aligning 10X Visium spatial transcriptomics datasets using STalign with Reticulate in R |

Aligning single-cell spatial transcriptomics datasets simulated with non-linear disortions |

10x Visium spatial transcriptomics data analysis with STdeconvolve in R |

Impact of normalizing spatial transcriptomics data in dimensionality reduction and clustering versus deconvolution analysis with STdeconvolve |

Aligning Spatial Transcriptomics Data With Stalign |


3D animation of the brain in R |

Ethical Challenges in Biomedical Engineering - Data Collection, Analysis, and Interpretation |

I use R to (try to) figure out the cost of medical procedures by analyzing insurance data from the Transparency in Coverage Final Rule |

Annotating STdeconvolve Cell-Types with ASCT+B Tables |

Deconvolution vs Clustering Analysis: An exploration via simulation |

Coloring SVGs in R |

Deconvolution vs Clustering Analysis for Multi-cellular Pixel-Resolution Spatially Resolved Transcriptomics Data |

Exploring UMAP parameters in visualizing single-cell spatially resolved transcriptomics data |


Animating RNA velocity with moving arrows |

A tale of two cell populations: integrating RNA velocity information in single cell transcriptomic data visualization with VeloViz |

Story-telling with Data Visualization |

Complementing single-cell clustering analysis with MERINGUE spatial analysis |

Randomly Generating Music with R |


Animating the Cell Cycle |

Using R To Find The Missing Faculty |

Using scVelo in R using Reticulate |

A Guide to Responding to Scientific Peer Review |

Quickly Creating Pseudobulks |

A Guide to Scientific Peer Review |

Ten PhD Transition Tips for the Biological Sciences |

RNA Velocity Analysis (In Situ) - Tutorial and Tips |


How to write an abstract |

Figure style faux pas |

Single-Cell RNA-seq Dimensionality Reduction with Deep Learning in R using Keras |

Automate testing of your R package using Travis CI, Codecov, and testthat |

Online bargain-hunting in R with rvest |


Interactive Exploration Of The Gender Pay Gap |

Nih F99 K00 Grant Tips Example And Personal Experience |

Single Cell Clustering Comparison |

Get your R package on CRAN in 10 steps |

Top 10 Must Use Terms To Get Your Next Nih Grant Funded |

Data Driven Faculty Job Search |

Visually Summarizing Differential Gene Expression |

Interactive Honeybadger Laf Profiles |

Interactive Tsne |

Setting Up New Server |

Stability Testing |

Phd Program Interview And Application Tips And Advice |

Biomedical Analogies |

Interactive Visualizations With Highcharter |

Fun With Word2vec |

Simpsons Paradox |


Barcode Doublets |

Nih F Series Grant Tips And Example |

Nsf Grfp Application Tips And Example |

Connected Barplot For Series Data Visualization |

Graph Based Community Detection For Clustering Analysis |

Machine Learning Feature Selection For Diffexp Analysis |

5 Useful Bash Aliases And Functions |

A Practical Introduction To Finite Mixture Models |

5 Must Dos For Efficient Bioinformatics |

Custom Sequencing Library Bioinformatics |

Multiclass Diffential Expression Analysis |

How To Be A Research Parasite |

Cigar Strings For Dummies |

Practical Machine Learning For Everyday Life |

Lsf For Dummies |


Mapping Snps And Peaks To Genes In R |

Identifying And Characterizing Heterogeneity In Single Cell Rnaseq Data |

Signaling Network Reconstruction Using Bayesian Networks In R |