All Blog Posts
Using AI to find heterogeneous scientific speakers on November 4, 2024 by Prof. Jean Fan
The many ways to calculate Moran's I for identifying spatially variable genes in spatial transcriptomics data on August 29, 2024 by Prof. Jean Fan
Characterizing spatial heterogeneity using spatial bootstrapping with SEraster on July 23, 2024
I use R to (try to) figure out which hospital I should go to for shoppable medical services by comparing costs through analyzing Hospital Price Transparency data on April 22, 2024
Cross modality image alignment at single cell resolution with STalign on April 11, 2024
Spatial Transcriptomics Analysis Of Xenium Lymph Node on March 24, 2024
Querying Google Scholar with Rvest on March 18, 2024
Alignment of Xenium and Visium spatial transcriptomics data using STalign on December 27, 2023
Aligning 10X Visium spatial transcriptomics datasets using STalign with Reticulate in R on November 5, 2023
Aligning single-cell spatial transcriptomics datasets simulated with non-linear disortions on August 20, 2023
10x Visium spatial transcriptomics data analysis with STdeconvolve in R on May 29, 2023
Aligning Spatial Transcriptomics Data With Stalign on April 16, 2023
3D animation of the brain in R on November 8, 2022
Ethical Challenges in Biomedical Engineering - Data Collection, Analysis, and Interpretation on October 15, 2022
I use R to (try to) figure out the cost of medical procedures by analyzing insurance data from the Transparency in Coverage Final Rule on September 12, 2022
Annotating STdeconvolve Cell-Types with ASCT+B Tables on August 30, 2022
Deconvolution vs Clustering Analysis: An exploration via simulation on July 11, 2022
Coloring SVGs in R on June 17, 2022
Deconvolution vs Clustering Analysis for Multi-cellular Pixel-Resolution Spatially Resolved Transcriptomics Data on May 3, 2022
Exploring UMAP parameters in visualizing single-cell spatially resolved transcriptomics data on January 19, 2022
Animating RNA velocity with moving arrows on October 15, 2021
A tale of two cell populations: integrating RNA velocity information in single cell transcriptomic data visualization with VeloViz on October 6, 2021
Story-telling with Data Visualization on August 12, 2021
Complementing single-cell clustering analysis with MERINGUE spatial analysis on June 21, 2021
Randomly Generating Music with R on April 19, 2021
Animating the Cell Cycle on December 28, 2020
Using R To Find The Missing Faculty on November 30, 2020
Using scVelo in R using Reticulate on August 25, 2020
A Guide to Responding to Scientific Peer Review on June 17, 2020
Quickly Creating Pseudobulks on April 6, 2020
A Guide to Scientific Peer Review on March 23, 2020
Ten PhD Transition Tips for the Biological Sciences on January 23, 2020
RNA Velocity Analysis (In Situ) - Tutorial and Tips on January 14, 2020
How to write an abstract on September 24, 2019
Figure style faux pas on July 19, 2019
Single-Cell RNA-seq Dimensionality Reduction with Deep Learning in R using Keras on May 17, 2019
Automate testing of your R package using Travis CI, Codecov, and testthat on February 17, 2019
Online bargain-hunting in R with rvest on January 12, 2019
Interactive Exploration Of The Gender Pay Gap on December 15, 2018
Nih F99 K00 Grant Tips Example And Personal Experience on October 31, 2018
Single Cell Clustering Comparison on June 28, 2018
Get your R package on CRAN in 10 steps on June 18, 2018
Top 10 Must Use Terms To Get Your Next Nih Grant Funded on June 11, 2018
Data Driven Faculty Job Search on June 7, 2018
Visually Summarizing Differential Gene Expression on April 25, 2018
Interactive Honeybadger Laf Profiles on April 15, 2018
Interactive Tsne on April 10, 2018
Setting Up New Server on March 10, 2018
Stability Testing on February 28, 2018
Phd Program Interview And Application Tips And Advice on February 26, 2018
Biomedical Analogies on February 16, 2018
Interactive Visualizations With Highcharter on February 10, 2018
Fun With Word2vec on February 6, 2018
Simpsons Paradox on January 5, 2018
Barcode Doublets on December 14, 2017
Nih F Series Grant Tips And Example on October 19, 2017
Nsf Grfp Application Tips And Example on October 15, 2017
Connected Barplot For Series Data Visualization on September 21, 2017
Graph Based Community Detection For Clustering Analysis on September 13, 2017
Machine Learning Feature Selection For Diffexp Analysis on August 31, 2017
5 Useful Bash Aliases And Functions on August 13, 2017
A Practical Introduction To Finite Mixture Models on August 5, 2017
5 Must Dos For Efficient Bioinformatics on August 3, 2017
Custom Sequencing Library Bioinformatics on June 9, 2017
Multiclass Diffential Expression Analysis on May 31, 2017
How To Be A Research Parasite on April 28, 2017
Cigar Strings For Dummies on March 28, 2017
Practical Machine Learning For Everyday Life on March 19, 2017
Lsf For Dummies on January 25, 2017
Mapping Snps And Peaks To Genes In R on December 6, 2016
Identifying And Characterizing Heterogeneity In Single Cell Rnaseq Data on November 24, 2016
Signaling Network Reconstruction Using Bayesian Networks In R on September 30, 2016